PUBLICATIONS
SERGUEI V. S. PAKHOMOV
2006
Bursi F, Weston SA, Redfield MM, Jacobsen SJ, Pakhomov S, Nkomo VT, Meverden, RA, Roger, VL. (2006). Systolic and Diastolic Heart Failure in the Community. JAMA 2006;296(18):2209-2216. ( pubmed )
Pakhomov, S, Buntrock, J, Chute, CG. Improving the efficiency of manual classification of clinical diagnoses with example-based and machine learning techniques. Journal of American Medical Informatics Association (JAMIA) 2006;13:516-525. ( pubmed )
Pedersen, T, Pakhomov, S, Patwardhan, S. (2005). Measures of Semantic Similarity and Relatedness in the Biomedical Domain. Journal of Biomedical Informatics (in press) ( pubmed )
Pakhomov, S. and Chute, C. A Hybrid Approach to Determining Modification of Clinical Diagnoses. Proceedings of the American Medical Informatics Association Annual Symposium 2006; (In press). ( pubmed )
Joshi, M., Pakhomov, S., Pedersen, T. and Chute, C. Supervised Acronym Disambiguation in Clinical Discourse. Proceedings of the American Medical Informatics Association Annual Symposium 2006; (In press). ( pubmed )
2005
Pakhomov, S., Coden, A., & Chute, C. G. (2005). Developing a Corpus of Clinical Notes Manually Annotated for Part-of-Speech. International Journal of Medical Informatics (Special Issue on Natural Language Processing in Biomedical Applications, 75(6):418-29). ( pubmed )
Pakhomov, S., Buntrock, J., & Chute, C. G. (2005). Prospective Recruitment of Patients with Congestive Heart Failure using an Ad-hoc Binary Classifier. Journal of Biomedical Informatics, 38 (2), 145-153. ( pubmed )
Coden, A., Pakhomov, S., Ando, R., Duffy, P., & Chute, C. G. (2005). Domain-specific language models and lexicons for tagging. Journal of Biomedical Informatics, 38 (2), 422-430. ( pubmed )
Pedersen, T., & Pakhomov, S. (2005). Developing Measures of Semantic Relatedness for the Biomedical Domain. Digital Technology Initiatives Forum, Digital Technology Center, University of Minnesota: Minneapolis, MN.
Rindflesch, T. C., Pakhomov, S., Fiszman, M., Kilicoglu, H., & Sanches, V. (2005). Medical Facts to Support Inferencing in Natural Language Processing. Paper presented at the American Medical Informatics Association Annual Symposium, Washington, DC.
Kogan, Y., Collier, N., Pakhomov, S., & Krauthammer, M. (2005). Towards Semantic Role Labeling & IE in the Medical Literature. Paper presented at the American Medical Informatics Association Annual Symposium, Washington, DC.
Pakhomov, S., Pedersen, T., & Chute, C. G. (2005). Abbreviation and Acronym Disambiguation in Clinical Discourse. Paper presented at the American Medical Informatics Association Annual Symposium, Washington, DC. ( PDF )
Pakhomov, S., Buntrock, J., & Duffy, P. (2005). High Throughput Modularized NLP System for Clinical Text (Interactive Poster). 43rd Annual Meeting of the Association for Computational Linguistics, Ann Arbor, MI. ( PDF )
2004
Pakhomov, S., Coden, A., & Chute, C. G. (2004). Creating a Test Corpus of Clinical Notes Manually Tagged for Part-of-Speech Information (Poster). Biomedical NLP Workshop at Computational Linguistics Conference: Geneva, Switzerland. ( PDF )
Pakhomov, S., Buntrock, J., & Chute, C. G. (2004). Using Compound Codes for Automatic Classification of Clinical Diagnoses. Paper presented at the Medinfo, San Francisco, CA. ( PDF )
Ruggieri, A., & Pakhomov, S. (2004). A Corpus Driven Approach Applying the 'Frame Semantic' Method for Modeling Functional Status Terminology. Paper presented at the Medinfo, San Francisco, CA. ( PDF )
Thomson-McInness, B., Pakhomov, S., Pedersen, T., & Chute, C. G. (2004). Automating Spelling Correction Tools Using Bigram Statistics. Medinfo Symposium: San Francisco, CA.
2003
Pakhomov, S., Buntrock, J., & Chute, C. G. (2003). Identification of Patients with Congestive Heart Failure Using a Binary Classifier. Paper presented at the Biomedical NLP Workshop at the 41st Meeting of the Association for Computational Linguistics, Sapporo, Japan. ( PDF )
Bodenreider, O., & Pakhomov, S. (2003). Exploring Adjectival Modification in Biomedical Terms across Two Genres. Paper presented at the Biomedical NLP Workshop at the 41st Meeting of the Association for Computational Linguistics, Sapporo, Japan. ( PDF )
2002
Pakhomov, S., Ruggieri, A., & Chute, C. G. (2002). Maximum Entropy Modeling for Mining Patient Medication Status from Free Text. Paper presented at the American Medical Informatics Association Symposium, San Antonio, TX. ( PDF )
Pakhomov, S. (2002). Semi-Supervised Maximum Entropy Based Approach to Acronym and Abbreviation Normalization in Medical Texts. Paper presented at the 40th Meeting of the Association for Computational Linguistics, Philadelphia, PA. ( PDF )
2001
Pakhomov. S. (2001) Hesitations and Cognitive Status of Noun Phrase Referents in Spontaneous Discourse. (PhD Thesis) University of Minnesota ( PDF )
Pakhomov, S., Schonwetter, M., & Bachenko, J. (2001). Generating Training Data for Medical Dictations. Paper presented at the The 2nd Meeding of the North American Chapter of the Association for Computational Linguistics, Pittsburgh, PA. ( PDF )
2000
Pakhomov, S., Schonwetter, M and Bachenko, J. (2000). Dynamic Partial Transcription Recycling System. (Demonstration Abstract) Joint ANLP/NAACL 2000 Conference, Seattle, WA. ( PDF )
1999
Pakhomov, S. (1999). Modeling Filled Pauses in Medical Dictations (Student Paper). Paper presented at the 37th Annual Meeting of the Association for Computational Linguistics, College Park, MD. ( PDF )
Pakhomov, S., & Savova, G. (1999). Filled Pause Distribution and Modeling in Quasi-spontaneous Speech. Paper presented at the Disfluency Workshop at International Congress of Phonetic Sciences, Berkely, CA. ( PDF )