Sequences, alignments
Fasta sequences - Predicted fasta-format protein sequences & annotations
Complete HMM alignment - Selex-format alignments
- View alignment using JalView: Note: -may load slowly. Try the second (indel-free) alignment first. JalView won't work on some old browsers, such as Netscape 4.7.
- Same alignment, with indels removed (only HMM model states shown):
Consensus sequence - HMM-emitted consensus sequence.
Arabidopsis genomic positions and gene trees
Genomic positions - Gene positions vs. Arabidopsis internal duplications
Genomic positions - text - Text file describing duplication locations
Tree with bootstrap values - Neighbor joining tree & bootstrap (ATV applet)
Tree with genomic positions - Tree with genomic positions etc.
Multi-species gene trees
Multi-species tree - Parsimony/ML tree of four dicot species (ATV applet)
Return to the main Plant Gene Family Evolution page.