Parameters for files in ../../../MouseHuman/15_BAP_out:
  _sc  score_cutoff    bit score cutoff before diag search 600 
  _cf  compress_factor original matrix is compressed by    220 
  _l   min_diag_len    min diag length of compressed diag  3 
  _sn  sensitivity     sensitivity (see manpage)           75 
  _q   min_diag_qual   min diag quality (see manpage)      15 
       file            input matrix                        chr2x1.hits 
       scale_factor    scales the dot plot                 0.25 
  
  Color key:
       red     both genes are w/w or c/c orientation (or if no w/c info)
       violet  both genes are w/c or c/w orientation
       black   (small plot): diagonal
       green   (large plot): diagonal (numbered to match text output
               in .coords and diagonal_group_*.txt files)
  

  files_in:  [chr2x1.hits]  
  in_dir:  ../../../MouseHuman/15_BAP_out
  out_dir:  ../../../MouseHuman/20_DH_out
  compress_factor:  220
  use_orientation:  1
  make_images:  1
  scale_factor:  0.25
  ids_on_png:  1
  score_column:  7
  score_cutoff:  600
  near_main_diag:  35
  min_diag_len:  3
  sensitivity:  75
  min_diag_qual:  15


Program: DiagHunter_0.99.pl
Version: 0.99
The program was run on 3/4/2003